HsaEX6100186 @ hg19
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:11035]
Coordinates
chr5:139745419-139747166:+
Coord C1 exon
chr5:139745419-139745607
Coord A exon
chr5:139745736-139745849
Coord C2 exon
chr5:139747005-139747166
Length
114 bp
Sequences
Splice sites
3' ss Seq
GAGTGTCCACTGTGTGCCAGGTG
3' ss Score
6.69
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GACTTAGGCCTGATCAATGCATCCTTGCTGCCGCCACCTGAGTGCACCCGGCAGGGAGGCCACCCTCGTGGCCCTGGCTGTCATACAGTCCCAGACATTGCCTTCTTCTCCCTTCTCCTCTTCCTTACTTCTTTCTTCTTTGCTATGGCCCTCAAGTGTGTAAAGACCAGCCGCTTCTTCCCCTCTGTG
Seq A exon
GTGCGCAAAGGGCTCAGCGACTTCTCCTCAGTCCTGGCCATCCTGCTCGGCTGTGGCCTTGATGCTTTCCTGGGCCTAGCCACACCAAAGCTCATGGTACCCAGAGAGTTCAAG
Seq C2 exon
CCCACACTCCCTGGGCGTGGCTGGCTGGTGTCACCTTTTGGAGCCAACCCCTGGTGGTGGAGTGTGGCAGCTGCCCTGCCTGCCCTGCTGCTGTCTATCCTCATCTTCATGGACCAACAGATCACAGCAGTCATCCTCAACCGCATGGAATACAGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073-'13-17,'13-16,14-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.1=100)
A:
PF0095516=HCO3_cotransp=FE(15.1=100)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCCCAGACATTGCCTTC
R:
CGGTTGAGGATGACTGCTGTG
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)