MmuEX6001034 @ mm9
Exon Skipping
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36693231-36695097:+
Coord C1 exon
chr18:36693231-36693416
Coord A exon
chr18:36693543-36693656
Coord C2 exon
chr18:36694936-36695097
Length
114 bp
Sequences
Splice sites
3' ss Seq
AGCGTCCACTCTATGGCCAGGTG
3' ss Score
6.37
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCAGGTCTAGTCAATGCTTCCTTCCTGCCTCCACCTGAGTGCATCCGGCAAGGAGGTCACCCTCTCGGCCCCAGCTGTCACACGGTGCCAGACATCGCCTTCTTCTCCCTTCTCCTCTTCTTTACTTCTTTCCTTTGTGCCATTGCTCTCAAGCACATAAAGAACAGCCGCTTCTTCCCCTCTGTG
Seq A exon
GTGCGCAAGGTGTTGGGCGACTTTTCCTCAGTCCTGGCCATCCTGCTGGGCTGTGGCCTTGACACCTTCCTGGGCCTAGCCACACCGAAGCTCTTGGTGCCCACAGAATTCAAG
Seq C2 exon
CCTACACTCTCTGGGCGTGGCTGGCTGGTGTCTCCTTTTGGAGCTAACCCCTGGTGGCTGAGTGTGGCCGCTGCCTTGCCCGCTCTACTGCTGTCAATCCTTATCTTCATGGACCAGCAGATCACGGCAGTCATCCTCAACCGTGCAGAATACAGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.5=100)
A:
PF0095516=HCO3_cotransp=FE(19.2=100)
C2:
PF0095516=HCO3_cotransp=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGACATCGCCTTCTTCTC
R:
CTGCACGGTTGAGGATGACTG
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: