GgaEX6010918 @ galGal4
Exon Skipping
Gene
ENSGALG00000001045 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:HGNC:11035]
Coordinates
chr13:981831-983707:+
Coord C1 exon
chr13:981831-982003
Coord A exon
chr13:982142-982255
Coord C2 exon
chr13:983546-983707
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCTGTGGCATTGCAGCTT
3' ss Score
7.63
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
CCTTGGTCGCACTGAGCCGGGCCCAGTGCCTGGGCCGAGGAGGCCACCTCCTGGGGACCAGCTGCCAGTATGTGCCTGACATTGCTCTTCTGTCCTTCCTCCTCTTTGGAGGCACCTTCCTCTGCTGCACCACACTCAAGCATTTCAAGAGCAGCTGCTACTTCCCCATGGGG
Seq A exon
CTTCGGAAGCTGGTGAGTGACTTCTCCATCATCCTGGCCATCCTCATCTTCTGTGCCATCGATGCGGCCCTTGGCCTGGAGACCCCCAAGCTCCTGGTTCCCAGCGAGCTGAAG
Seq C2 exon
CCCACAAATCCCATGAGGGGCTGGATTGTCTTCCCCTTTGGAGCCAACCCCTGGTGGATCTGCCTGGCGTCTGTGGTGCCTGCCATCCTCGTTACCATCCTCATTTTCATGGACCAGCAGATCACAGCTGTCATTCTTAACCGCAAGGAGTACAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-'15-19,'15-18,16-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.3=100)
A:
PF0095516=HCO3_cotransp=FE(8.0=100)
C2:
PF0095516=HCO3_cotransp=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTTCTGTCCTTCCTCCT
R:
CAGCTTGTACTCCTTGCGGTT
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]