GgaEX6010918 @ galGal3
Exon Skipping
Gene
ENSGALG00000001045 | SLC4A9
Description
NA
Coordinates
chr13:1434130-1436006:+
Coord C1 exon
chr13:1434130-1434302
Coord A exon
chr13:1434441-1434554
Coord C2 exon
chr13:1435845-1436006
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCTGTGGCATTGCAGCTT
3' ss Score
7.63
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
CCTTGGTCGCACTGAGCCGGGCCCAGTGCCTGGGCCGAGGAGGCCACCTCCTGGGGACCAGCTGCCAGTATGTGCCTGACATTGCTCTTCTGTCCTTCCTCCTCTTTGGAGGCACCTTCCTCTGCTGCACCACACTCAAGCATTTCAAGAGCAGCTGCTACTTCCCCATGGGG
Seq A exon
CTTCGGAAGCTGGTGAGTGACTTCTCCATCATCCTGGCCATCCTCATCTTCTGTGCCATCGATGCGGCCCTTGGCCTGGAGACCCCCAAGCTCCTGGTTCCCAGCGAGCTGAAG
Seq C2 exon
CCCACAAATCCCATGAGGGGCTGGATTGTCTTCCCCTTTGGAGCCAACCCCTGGTGGATCTGCCTGGCGTCTGTGGTGCCTGCCATCCTCGTTACCATCCTCATTTTCATGGACCAGCAGATCACAGCTGTCATTCTTAACCGCAAGGAGTACAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001045-'12-16,'12-15,13-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.9=100)
A:
PF0095516=HCO3_cotransp=FE(7.1=100)
C2:
PF0095516=HCO3_cotransp=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTTCTGTCCTTCCTCCT
R:
CAGCTTGTACTCCTTGCGGTT
Band lengths:
250-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]