MmuEX6001034 @ mm10
Exon Skipping
Gene
ENSMUSG00000024485 | Slc4a9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:MGI Symbol;Acc:MGI:2443384]
Coordinates
chr18:36533577-36535701:+
Coord C1 exon
chr18:36533577-36533762
Coord A exon
chr18:36533889-36534002
Coord C2 exon
chr18:36535638-36535701
Length
114 bp
Sequences
Splice sites
3' ss Seq
AGCGTCCACTCTATGGCCAGGTG
3' ss Score
6.37
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCAGGTCTAGTCAATGCTTCCTTCCTGCCTCCACCTGAGTGCATCCGGCAAGGAGGTCACCCTCTCGGCCCCAGCTGTCACACGGTGCCAGACATCGCCTTCTTCTCCCTTCTCCTCTTCTTTACTTCTTTCCTTTGTGCCATTGCTCTCAAGCACATAAAGAACAGCCGCTTCTTCCCCTCTGTG
Seq A exon
GTGCGCAAGGTGTTGGGCGACTTTTCCTCAGTCCTGGCCATCCTGCTGGGCTGTGGCCTTGACACCTTCCTGGGCCTAGCCACACCGAAGCTCTTGGTGCCCACAGAATTCAAG
Seq C2 exon
ACAGTCTTCGGAGAGAGAGCAAAGCCTGCATCCCTGGAGAAGCCCCCAATTTCCTGGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024485_MULTIEX1-13/16=12-16
Average complexity
C2
Mappability confidence:
99%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.5=100)
A:
PF0095516=HCO3_cotransp=FE(8.8=100)
C2:
PF0095516=HCO3_cotransp=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTCTAGTCAATGCTTCCT
R:
CAGGAAATTGGGGGCTTCTCC
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types