BtaEX0033585 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005108 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr6:41540765-41549560:+
Coord C1 exon
chr6:41540765-41540928
Coord A exon
chr6:41545703-41545853
Coord C2 exon
chr6:41549486-41549560
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTGGCTTGAATCCTCAATAGGTA
3' ss Score
5.31
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCATTTGGCCCAGAACCCCTTTATTTGTGACTGCCATCTCAAGTGGCTGGCGGATTATCTCCATACCAACCCAATCGAGACCAGTGGTGCCCGCTGCACCAGTCCCCGGCGACTGGCAAACAAAAGAATCGGACAGATCAAAAGCAAGAAATTCCGTTGTTCAG
Seq A exon
GTACAGAAGATTATCGATCAAAATTAAGTGGGGACTGCTTTGCCGATTTGGCTTGCCCTGAAAAGTGCCGCTGCGAAGGGACCACAGTAGACTGCTCCAATCAAAAACTCACCAAAATCCCAGATCACATTCCCCAGTACACTGCAGAGCT
Seq C2 exon
GCGCCTCAACAATAATGAATTTACAGTGTTGGAAGCTACCGGGATCTTCAAGAAACTTCCTCAGTTACGTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005108_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5)
A:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(5.0=5.9)
C2:
PF138551=LRR_8=FE(41.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGGCCCAGAACCCCTTT
R:
TGAGGAAGTTTCTTGAAGATCCCG
Band lengths:
226-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development