GgaEX1053883 @ galGal4
Exon Skipping
Gene
ENSGALG00000014419 | SLIT2
Description
slit homolog 2 protein precursor [Source:RefSeq peptide;Acc:NP_001254004]
Coordinates
chr4:74611707-74621678:-
Coord C1 exon
chr4:74621515-74621678
Coord A exon
chr4:74617091-74617241
Coord C2 exon
chr4:74611707-74611781
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTGACTTGACTCTTCCACAGGCA
3' ss Score
7.8
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GCATTTGGCTCAGAACCCATTTATCTGTGACTGCCATCTGAAGTGGCTGGCGGATTATCTTCATACAAACCCCATTGAGACCAGTGGTGCCCGCTGCACCAGCCCCCGCCGTCTGGCAAACAAAAGGATCGGCCAGATCAAAAGCAAGAAATTCCGCTGCTCAG
Seq A exon
GCACTGAAGATTACAGATCCAAATTAAGTGGTGACTGCTTTGCAGATTTGGCTTGCCCTGAGAAATGTCGCTGTGAAGGGACCACAGTGGACTGCTCCAATCAGAAACTCAACAAAATTCCTGATCACATCCCACAGTACACAGCAGAGTT
Seq C2 exon
GCGACTCAATAACAATGAATTTTCAGTCCTGGAAGCTACTGGGATCTTTAAGAAGCTTCCTCAACTGCGAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-'15-33,'15-31,19-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5)
A:
PF0146213=LRRNT=WD(100=54.9),PF127992=LRR_4=PU(2.4=2.0)
C2:
PF127992=LRR_4=FE(61.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGGCTCAGAACCCATT
R:
TCGCAGTTGAGGAAGCTTCTT
Band lengths:
234-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]