HsaEX6083762 @ hg19
Exon Skipping
Gene
ENSG00000145147 | SLIT2
Description
slit homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:11086]
Coordinates
chr4:20525637-20533681:+
Coord C1 exon
chr4:20525637-20525800
Coord A exon
chr4:20530572-20530722
Coord C2 exon
chr4:20533607-20533681
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTGAATTCTCAATAGGTA
3' ss Score
7.45
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GCATTTGGCCCAGAACCCCTTTATTTGTGACTGCCATCTCAAGTGGCTAGCGGATTATCTCCATACCAACCCGATTGAGACCAGTGGTGCCCGTTGCACCAGCCCCCGCCGCCTGGCAAACAAAAGAATTGGACAGATCAAAAGCAAGAAATTCCGTTGTTCAG
Seq A exon
GTACAGAAGATTATCGATCAAAATTAAGTGGAGACTGCTTTGCGGATCTGGCTTGCCCTGAAAAGTGTCGCTGTGAAGGAACCACAGTAGATTGCTCTAATCAAAAGCTCAACAAAATCCCGGAGCACATTCCCCAGTACACTGCAGAGTT
Seq C2 exon
GCGTCTCAATAATAATGAATTTACCGTGTTGGAAGCCACAGGAATCTTTAAGAAACTTCCTCAATTACGTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147-'18-19,'18-18,20-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=12.5)
A:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(5.0=5.9)
C2:
PF138551=LRR_8=FE(41.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGGCCCAGAACCCC
R:
ACGTAATTGAGGAAGTTTCTTAAAGA
Band lengths:
234-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)