GgaEX1053883 @ galGal3
Exon Skipping
Gene
ENSGALG00000014419 | Q90XG3_CHICK
Description
NA
Coordinates
chr4:77768598-77777652:-
Coord C1 exon
chr4:77777629-77777652
Coord A exon
chr4:77773982-77774132
Coord C2 exon
chr4:77768598-77768672
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTGACTTGACTCTTCCACAGGCA
3' ss Score
7.8
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
CTAAAGAGCAGTATTTCATTCCAG
Seq A exon
GCACTGAAGATTACAGATCCAAATTAAGTGGTGACTGCTTTGCAGATTTGGCTTGCCCTGAGAAATGTCGCTGTGAAGGGACCACAGTGGACTGCTCCAATCAGAAACTCAACAAAATTCCTGATCACATCCCACAGTACACAGCAGAGTT
Seq C2 exon
GCGACTCAATAACAATGAATTTTCAGTCCTGGAAGCTACTGGGATCTTTAAGAAGCTTCCTCAACTGCGAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-'22-34,'22-33,24-34=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0146213=LRRNT=WD(100=54.9),PF127992=LRR_4=PU(2.4=2.0)
C2:
PF127992=LRR_4=FE(61.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]