DreEX0073466 @ danRer10
Exon Skipping
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23174108-23198917:+
Coord C1 exon
chr1:23174108-23174271
Coord A exon
chr1:23176793-23176943
Coord C2 exon
chr1:23198824-23198917
Length
151 bp
Sequences
Splice sites
3' ss Seq
GGGTGTGGTATTATAAATAGGCG
3' ss Score
4.28
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
TCATCTGGCCCAGAACCCCTTCATGTGTGACTGCCATTTGAAGTGGTTAGCAGATTACCTGCAAGACAACCCTATTGAGACCAGTGGAGCTCGGTGCACCAGTCCCCGGCGCCTTGCTAACAAACGTATTGGCCAGATCAAGAGCAAAAAGTTCCGCTGTTCAG
Seq A exon
GCGTAGAAGACTACCGCTCAAAACTAGGTGGGGATTGCTTTGCTGATTTGGCCTGTCCAGAGAAATGTCGATGTGAAGGAACCACAGTGGACTGCTCTGGACAAAAGCTCACCAAGATCCCAGACCACATCCCTCAGTATACAGCAGAACT
Seq C2 exon
GGGAGCTGTGTGAAGATAAGCTGGATTTTTGTGCTTCAGAGCTTAACCTGTGTCAGCATGACTCCAAATGTATTCTGACTGCTAAAGGCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246_MULTIEX2-2/18=C1-18
Average complexity
C3
Mappability confidence:
97%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(35.4=30.4)
A:
PF0146213=LRRNT=WD(100=54.9),PF138551=LRR_8=PU(5.0=5.9)
C2:
PF0000822=EGF=PD(6.5=6.2),PF0000822=EGF=PU(63.6=65.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAACCCCTTCATGTGTG
R:
GCCTTTAGCAGTCAGAATACATTTGG
Band lengths:
245-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]