BtaEX0035580 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48400254-48406633:+
Coord C1 exon
chr19:48400254-48400400
Coord A exon
chr19:48402992-48403092
Coord C2 exon
chr19:48404680-48406633
Length
101 bp
Sequences
Splice sites
3' ss Seq
CACACCTATTGTAATGACAGGAT
3' ss Score
3.45
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAAGGTAAAGTAAAGGAAGCCGCCCAGCGCTACCAGTATGCCCTGAAGAAGTTCCCTAGAGAAGGGTTTGGTGAGGACTTGAAAACCTTCCGGGAGCTGAAGGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
Seq A exon
GATTTTGGAATGGCGGAGGAATTTGCTACTAAGGCCCTGGAGCTGAAACCGAAATCTTATGAAGCTTACTATGCAAGAGCAAGGGCCAAACGCAGCAGCAG
Seq C2 exon
ACAGTTTGCAGCAGCCTTAGAGGACCTGAACGAGGCCATCAAGCTGTGTCCAAACAACCGTGAGATCCAGCGGCTTCTGCTGCGGGTGGAGGAGGAGTGTCGACAGATGCAGCAGCAGCCGCCGGTGCAACAGCAGCCTCCGCAGCAGCAGCTCCCAGAGGAAGCAGAGCCTGAACCCCAGCACGAAGACATCTACTCCGTACAGGACATACTCGAGGAGGAGTTCTTGGAACAGGACGTGGAGAACGTGTCCATCGGCCTCCAAACGGAGGCTCGGCCCAGCCAGGGGCTCCCCATCATCCAGAGCCCACCCTCCTCCCCAGCCCCCCGGGACTCAGCCTACATCTCCGGCTCGCCCCTCGGCTCGCATCAGGTTTTTGACTTCCGGTCCAGCAGTTCCGTAGGCTCTCCCACCAGGCAGAGCTATCAGTCCAGCTCACCCGCGCTCTCTCCAACTCACCAGAACTCACACTATCGGCCTAGTCCCCCGCACACTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.802
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(22.4=30.6)
A:
PF134141=TPR_11=FE(49.3=100)
C2:
PF134141=TPR_11=PD(25.4=2.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGGTGTCTCTCCTCCT
R:
TAGATGTCTTCGTGCTGGGGT
Band lengths:
247-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development