GgaEX6027269 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2540520-2545451:+
Coord C1 exon
chr27:2540520-2540666
Coord A exon
chr27:2543046-2543146
Coord C2 exon
chr27:2545211-2545451
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCCCCCTGTTGTAATGACAGGAC
3' ss Score
6.13
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAAGGTAAAGTGAAGGAGGCTGCCCAGCGCTACCAGTACGCCCTGAAGAAGTTCCCCAGGGAAGGCTTTGGGGAAGACCTGAAAACCTTCCGTGAGCTGAAGGTGTCACTCCTTCTCAACCTCTCCCGATGTCGAAGGAAAATGAAT
Seq A exon
GACTTTGGGATGGCGGAGGAATTCGCTACTAAAGCACTGGAGCTGAAACCGAAATCCTACGAAGCTTACTATGCAAGAGCAAGGGCCAAACGCAGCAGCAG
Seq C2 exon
GCAGTTTGCAGCAGCCCTGGAGGACCTGAACGAGGCCATCAAGCTGTGCCCCAACAACCGTGAGATCCAGCGGCTGCTGCTGCGGGTGGAGGAGGAGTGCCGACAGGTGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACCCCCGCTGCCAGCAGAGCCCGAGCCCGAAGCCCAGCATGAAGAGCTGTATTCCGTGCAAGACATTTTTGAGGAGGAGTACCTCGAGCAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.370
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(22.4=30.6)
A:
PF134141=TPR_11=FE(49.3=100)
C2:
PF134141=TPR_11=PD(25.4=21.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTCTCAACCTCTCCCG
R:
TGTCTTGCACGGAATACAGCT
Band lengths:
252-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]