MmuEX0046263 @ mm9
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105778228-105790618:+
Coord C1 exon
chr11:105778228-105778374
Coord A exon
chr11:105781265-105781365
Coord C2 exon
chr11:105783062-105790618
Length
101 bp
Sequences
Splice sites
3' ss Seq
CACACCTATTGTAATGACAGGAT
3' ss Score
3.45
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAAGGGAAAGTAAAGGAGGCTGCCCAGCGCTACCAGTATGCTCTGAAGAAATTCCCTAGAGAAGGGTTTGGTGAGGACCTGAAAACCTTCCGGGAGCTAAAAGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
Seq A exon
GATTTTGGAATGGCGGAGGAATTTGCTACTAAAGCCCTGGAGCTGAAACCGAAATCTTATGAAGCATACTATGCGAGAGCAAGGGCAAAACGCAGCAGCAG
Seq C2 exon
ACAGTTTGCAGCAGCCCTAGAGGACCTGAAAGAGGCCATCAAGCTATGTCCCAACAACCGTGAGATCCAGAGGCTTCTGATGCGAGTGGAGGAAGAGTGCAGACAGATGCAGCAGCAGCAGCAGCAGCAGCCACCACCCCCACCCCAGCAGCCTCCGCAGGAGTTGCCAGAGGAAGAAACAGAGCCTGAGCCCCAGCATGAAGATATATACTCTGTACAGGACATATTTGAGGAGGAATACTTGGAACAAGATGTTGAAAATGTTTCTATTGGCCTCCAGACAGAGGCTCGCCCCAGTCAGGGGCTCCCAGTAATCCAGAGCCCACCCTCCTCTCCAGCCCATCGGGACTCGGCCTACATCTCTAGCTCACCTCTTGGCTCTCATCAGGTTTTTGACTTCCGGTCCAATAGTTCTGTAGGTTCCCCCACTAGACAAGGTTATCAGTCCACTTCGCCTGCTCTTTCTCCAACTCACCAGAACTCTCATTACAGGCCTAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.848
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(20.0=26.5)
A:
PF134141=TPR_11=FE(50.8=100)
C2:
PF134141=TPR_11=PD(26.2=2.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGTAAAGGAGGCTGCCC
R:
GCTGCATCTGTCTGCACTCTT
Band lengths:
256-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: