RnoEX0088553 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94120700-94127697:+
Coord C1 exon
chr10:94120700-94120846
Coord A exon
chr10:94123406-94123506
Coord C2 exon
chr10:94124969-94127697
Length
101 bp
Sequences
Splice sites
3' ss Seq
CACACCTATTGTAATGACAGGAT
3' ss Score
3.45
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAAGGTAAAGTAAAGGAAGCTGCCCAGCGCTACCAGTATGCTCTGAAGAAATTCCCTAGAGAAGGGTTTGGTGAGGACTTGAAAACCTTCCGGGAGCTAAAAGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
Seq A exon
GATTTTGGAATGGCGGAGGAATTTGCTACTAAGGCCCTGGAGCTGAAACCGAAATCTTATGAAGCATACTATGCGAGAGCAAGGGCAAAACGCAGCAGCAG
Seq C2 exon
ACAGTTTGCAGCAGCCTTAGAGGACCTGAAAGAGGCCATCAAGCTATGTCCAAACAACCGTGAGATCCAGAGGCTTCTGATGCGAGTGGAGGAAGAATGCAGACAGATGCAGCAGCAGCAACAGCCGCCGCCACCACCCCAGCAGCCTCCAGAGGAGCTGCCAGAGGAAGAAACAGAGCCTGAGCCCCAGCCTGAAGATATATACTCTGTACAGGACATATTTGAGGAGGAGTACTTGGAACAAGATGTTGAAAATGTTTCTATTGGCCTCCAGACAGAGGCTCGCCCCAGTCAGGGGCTCCCAGTAATCCAGAGCCCACCCTCCTCTCCAGCCCATCGGGACTCAGCCTACATCTCTAGCTCACCTCTTGGCTCTCATCAGGTTTTTGACTTCCGGTCCAATAGTTCTGTAGGCTCTCCCACTAGACAAGGTTATCAATCCACCTCTCCTGCTCTTTCTCCGACTCACCAGAACTCTCATTATAGGCCTAGCCCACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.843
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(20.0=26.5)
A:
PF134141=TPR_11=FE(50.8=100)
C2:
PF134141=TPR_11=PD(26.2=2.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAAAACCTTCCGGGAGC
R:
GTTTCTTCCTCTGGCAGCTCC
Band lengths:
245-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]