GgaEX6027269 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2623168-2629807:+
Coord C1 exon
chr27:2623168-2623314
Coord A exon
chr27:2625694-2625794
Coord C2 exon
chr27:2627389-2629807
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCCCCCTGTTGTAATGACAGGAC
3' ss Score
6.13
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAAGGTAAAGTGAAGGAGGCTGCCCAGCGCTACCAGTACGCCCTGAAGAAGTTCCCCAGGGAAGGCTTTGGGGAAGACCTGAAAACCTTCCGTGAGCTGAAGGTGTCACTCCTTCTCAACCTCTCCCGATGTCGAAGGAAAATGAAT
Seq A exon
GACTTTGGGATGGCGGAGGAATTCGCTACTAAAGCACTGGAGCTGAAACCGAAATCCTACGAAGCTTACTATGCAAGAGCAAGGGCCAAACGCAGCAGCAG
Seq C2 exon
GCAGTTTGCAGCAGCCCTGGAGGACCTGAACGAGGCCATCAAGCTGTGCCCCAACAACCGTGAGATCCAGCGGCTGCTGCTGCGGGTGGAGGAGGAGTGCCGACAGGTGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACCCCCGCTGCCAGCAGAGCCCGAGCCCGAAGCCCAGCATGAAGAGCTGTATTCCGTGCAAGACATTTTTGAGGAGGAGTACCTCGAGCAGGACGTCGAGAACGTTTCCATTGGCTTGCAGACAGAGTCCAGGCCAAACCAAGGGCTTCCCATCATCCAGAGCCCACCCCCATCCCCGGCTCACCGGGACTCGGCCTATATTTCCGGCTCACCCCTCGGCTCCCATCAGGTCTTTGATTTCAGGTCCAACAGCTCGGTGGGCTCTCCCACCAGGCAGGGCTACCAGTCCACGTCTCCCACTCTGTCTCCGACACACCAGAACTCCCATTACCGGCCCAGTCCTCCACACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'35-28,'35-27,36-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTCTCAACCTCTCCCG
R:
TGTCTTGCACGGAATACAGCT
Band lengths:
252-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]