DreEX0077238 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22674445-22684511:+
Coord C1 exon
chr3:22674445-22674591
Coord A exon
chr3:22677683-22677783
Coord C2 exon
chr3:22681014-22684511
Length
101 bp
Sequences
Splice sites
3' ss Seq
GGTCCTGTTGTTGCTTGCAGGAC
3' ss Score
9.04
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
AAAGGAAAGGTGAAAGAAGCTGCTCAGAGGTACCAGTACGCCCTGAAGAAGTTTCCTCGAGAAGGTTTCACCGAGGATCTGAAGACCTTCCGTGAGCTCAAAGTGTCCCTGCTGCTCAACCTGTCCCGCTGCCGGAGGAAAATGAAC
Seq A exon
GACTTTGGGATGGCGGAGGAGTTTGCCTCCAAGGCACTAGAGTTGAAACCCAAATCCTATGAAGCCTATTACGCACGAGCCCGTGCCAAGCGCAGCAGCAG
Seq C2 exon
GCAATTCCACGCAGCCCTGGAGGACCTGAGTGAAGCTGTTCGTCTGTGTCCCAATAACCGCGAGATCCAGCGCCTGCTGCAACGTGTGGAGGAAGAGTGTCGTCAGGTTGAACAACAACAGGAGCTGGATCCCCCTCCTTCCCCTCCCCGCGAGCAAGCCCCATCCATGGTCCCGCCTCCACCTATGGAGCCCCATATTTCAGACATGGAGCCTGTCCAGGACTTGTTCGAAGAGGATGATGATTACCTTGAGCGGGATTTGGATGGCCTACCGCTAGGTGTTGCTGCTGAGACCCATATTATTCCCTCAGGACTTCCAGTCATTCAGAACATGCCTCCATCTCCAAGCCATCATGAGTCGCCATACTTGGGCCAAACATATGACCTTCGGCCCAGTCCCCCTTCAATGTCTTCTCCTACACGCCAAGGCTACCAATCCACCTCCCCATCGCTCTCGCCAACACACCAGAGCTCCCATTTCCGGCCCAGTCCTCCTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.926
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(23.5=32.7)
A:
PF134141=TPR_11=PD(20.3=47.1)
C2:
PF134141=TPR_11=PD(25.0=2.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTACGCCCTGAAGAAGT
R:
GGGATCCAGCTCCTGTTGTTG
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]