BtaEX0035695 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118247881-118278504:+
Coord C1 exon
chr6:118247881-118248001
Coord A exon
chr6:118276406-118276524
Coord C2 exon
chr6:118278422-118278504
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCCTGGTCTCTTTGTCCTAGGAA
3' ss Score
10.08
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GAATTCACTTGCTAGAAAACAGAATGCAAGACTTGACAAACAAAGTGACTTGGGATGGAAGTTATTTGGAAAAGTACCACTCGGAGAGAATGCTCAGAAAGATGCAAAGAAGTTACAAAAG
Seq A exon
GAATATGAAGACAAGGCTGGACGACCTAGCAAGCCTCCCTCTCCGAAGCAGAATGTGAGGAAGAATCTTGACTTTGAGCCTCTCTCCACCACCGCACTCATCCTGGAGGACAGGCCAGC
Seq C2 exon
AAATCTCCCAGCGAAGCCAGCTGAAGAAGCTCAGAAACACAGGCAGCAGTATGAAGAAATGGTGGTTCAGGCCAAAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.700 C2=0.793
Domain overlap (PFAM):
C1:
PF085986=Sds3=PU(11.0=31.7)
A:
PF085986=Sds3=PU(29.3=67.5)
C2:
PF085986=Sds3=FE(30.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTTGCTAGAAAACAGAATGCA
R:
TTTGGCCTGAACCACCATTTCT
Band lengths:
194-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development