HsaEX6083495 @ hg19
Exon Skipping
Gene
ENSG00000132405 | TBC1D14
Description
TBC1 domain family, member 14 [Source:HGNC Symbol;Acc:29246]
Coordinates
chr4:6969031-6998134:+
Coord C1 exon
chr4:6969031-6969151
Coord A exon
chr4:6995911-6996029
Coord C2 exon
chr4:6998052-6998134
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCCTGGTTTCTTTGTCCTAGGAA
3' ss Score
10.04
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GAACTTGCTTGCTAGAAAACAAAGTGCAAGGCTTGACAAACACAATGACTTGGGATGGAAGTTATTTGGGAAAGCGCCACTCCGAGAGAATGCCCAGAAGGATTCAAAGAGAATACAGAAG
Seq A exon
GAATATGAAGACAAGGCTGGAAGACCTAGCAAGCCACCCTCTCCAAAGCAGAATGTGAGGAAGAATCTTGACTTTGAACCACTTTCCACCACCGCACTCATCCTCGAGGACAGACCAGC
Seq C2 exon
AAATCTCCCAGCAAAACCAGCTGAAGAAGCTCAGAAGCACAGACAGCAGTATGAAGAAATGGTGGTTCAGGCCAAAAAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132405-'10-12,'10-10,12-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=0.700 C2=0.834
Domain overlap (PFAM):
C1:
NO
A:
PF085986=Sds3=PU(28.4=62.5)
C2:
PF085986=Sds3=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCTTGCTAGAAAACAAAGTGC
R:
CTCGCTTTTTGGCCTGAACCA
Band lengths:
202-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)