RnoEX6042776 @ rn6
Exon Skipping
Gene
ENSRNOG00000006400 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:RGD Symbol;Acc:1309993]
Coordinates
chr14:79387333-79409712:+
Coord C1 exon
chr14:79387333-79387453
Coord A exon
chr14:79407476-79407594
Coord C2 exon
chr14:79409630-79409712
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTTGATCTCTTTGTCCTAGGAA
3' ss Score
9.19
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAATTTGCTTGCTAGAAAGCAAAATGCAAGACTTGATAGACAGAGAGATTTGGGATGGAAGCTGTTTGGAAAAGTCCCACTCCGAGAGACTGCTCAGAAAGATTCAAAGAAAACACAAAAG
Seq A exon
GAATATGAAGACAAGGCTGGAAGACCAAGCAGGCCGCCCTCTCCAAAGCAGAATGTGAGGAAGAACCTGGATTTTGAGCCACTGTCCACCACAGCGCTCATCCTTGAGGACAGACCCGC
Seq C2 exon
GAATCTCCCAGCAAAGCCAGCTGAAGAAGCTCAAAAGCACAGACAGCAGTATGAAGAGATGGTGGTGCAGGCTAAGAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006400-'24-18,'24-17,34-18=AN
Average complexity
A_C2
Mappability confidence:
69%=92=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.725 C2=0.841
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAATGCAAGACTTGATAGACAGA
R:
CTCGTTTCTTAGCCTGCACCA
Band lengths:
186-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]