MmuEX0046408 @ mm9
Exon Skipping
Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36865576-36885946:-
Coord C1 exon
chr5:36885826-36885946
Coord A exon
chr5:36867579-36867697
Coord C2 exon
chr5:36865576-36865658
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACCTGATGTCTTTGTTCTAGGAA
3' ss Score
11.03
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
GAATTTGCTTGCTAGAAAACAAAATGCAAGGCTTGATAGACAGAGAGACTTGGGATGGAAGCTGTTTGGAAAAGTCCCACTCCGAGAGACTGCTCAGAAAGATTCAAAGAAGACCCAGAAG
Seq A exon
GAATATGAAGACAAGGCTGGAAGACCGAGCAGGCCACCCTCTCCCAAGCAGAATGTGAGGAAGAACCTGGATTTTGAGCCACTGTCCACCACGGCGCTCATCCTCGAGGACAGACCTGC
Seq C2 exon
AAATCTCCCAGCCAAGCCAGCTGAAGAAGCTCAAAAGCACAGACAGCAGTATGAAGAGATGGTGCTGCAGGCCAAGAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192-'21-27,'21-25,27-27
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.712 C2=0.717
Domain overlap (PFAM):
C1:
NO
A:
PF085986=Sds3=PU(27.8=62.5)
C2:
PF085986=Sds3=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCTTGCTAGAAAACAAAATGCA
R:
CTCGTTTCTTGGCCTGCAGC
Band lengths:
202-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: