DreEX0077407 @ danRer10
Exon Skipping
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39417226-39422296:+
Coord C1 exon
chr7:39417226-39417352
Coord A exon
chr7:39421858-39421976
Coord C2 exon
chr7:39422214-39422296
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTTATTTAATATTTTGACAGGAA
3' ss Score
5.92
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GGGTCTTTTTGCTAAGAGGATGAAGGACACTGGTGCACTAGAAGGGCAGAGAGAGCCTGGGTGGAAGCTGTTTGGTAAAGTTCCACATAAAGATCTTCCAACCAAAGACTCCAGGAAACTACAAAAG
Seq A exon
GAATATGAAAGAAGGAGTGGACACACAAGCAATTCCACATCTCCCAAAAAGAATGTAAGAAAGAACCTGGACTTTGAGCCTCTATCAACCACAGCCCTTATACTTGAGAATCGTCCAGC
Seq C2 exon
GAATCTTCCTGCAAAACCTGAGGAAGAAGCCCAAAAACACAGACAACAATATGAGGAAATGGTGGCTCAAGCCAAGAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520-'4-10,'4-9,7-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.721 A=0.725 C2=1.000
Domain overlap (PFAM):
C1:
PF085986=Sds3=PU(3.1=14.0)
A:
PF085986=Sds3=FE(20.4=100)
C2:
PF085986=Sds3=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTTTTTGCTAAGAGGATGA
R:
GCTTGAGCCACCATTTCCTCA
Band lengths:
199-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]