GgaEX1057310 @ galGal4
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
TBC1 domain family member 14 [Source:RefSeq peptide;Acc:NP_001239243]
Coordinates
chr4:79461633-79482889:+
Coord C1 exon
chr4:79461633-79461753
Coord A exon
chr4:79480119-79480237
Coord C2 exon
chr4:79482807-79482889
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTATCTTTTTCTTCTCTAGGAA
3' ss Score
12.72
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAATTTGTTTACCAGGAAGCAAAATGCAAGATCTGAAAAACAAAATGATGTGGGCTGGAAGTTGTTTGGAAAAGTACCCCTCAGAGAAAACTCACAGAAAGATCCTAAAAAAATACAAAAG
Seq A exon
GAATATGAAGAAAAAACTGGACGAGCTCACAGACCACTCTCTCCTAAGCAGAATGTGAGGAAGAACCTTGATTTTGAGCCACTCTCCACTACTGCACTTATTTTAGAGGACAGACCAGC
Seq C2 exon
GAACCTCCCAGCAAAACCAGCAGAAGAAGCTCAGAAACACAGACAGCAGTACGAAGAAATGGTGGTTCAAGCAAAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-'9-20,'9-18,25-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=0.692 C2=0.770
Domain overlap (PFAM):
C1:
NO
A:
PF085986=Sds3=PU(34.4=82.5)
C2:
PF085986=Sds3=FE(29.2=100)
Main Skipping Isoform:
ENSGALT00000025058fB2840
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGTTTACCAGGAAGCAAAATGC
R:
TTTGCTTGAACCACCATTTCTTCG
Band lengths:
194-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]