GgaEX1057310 @ galGal3
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82854113-82876178:+
Coord C1 exon
chr4:82854113-82854233
Coord A exon
chr4:82873408-82873526
Coord C2 exon
chr4:82876096-82876178
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTATCTTTTTCTTCTCTAGGAA
3' ss Score
12.72
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAATTTGTTTACCAGGAAGCAAAATGCAAGATCTGAAAAACAAAATGATGTGGGCTGGAAGTTGTTTGGAAAAGTACCCCTCAGAGAAAACTCACAGAAAGATCCTAAAAAAATACAAAAG
Seq A exon
GAATATGAAGAAAAAACTGGACGAGCTCACAGACCACTCTCTCCTAAGCAGAATGTGAGGAAGAACCTTGATTTTGAGCCACTCTCCACTACTGCACTTATTTTAGAGGACAGACCAGC
Seq C2 exon
GAACCTCCCAGCAAAACCAGCAGAAGAAGCTCAGAAACACAGACAGCAGTACGAAGAAATGGTGGTTCAAGCAAAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-'2-14,'2-12,10-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.688 C2=0.759
Domain overlap (PFAM):
C1:
NO
A:
PF085986=Sds3=PU(34.4=82.5)
C2:
PF085986=Sds3=FE(29.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGTTTACCAGGAAGCAAAATGC
R:
TTTGCTTGAACCACCATTTCTTCG
Band lengths:
194-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]