BtaEX0037694 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018920 | TRIM47
Description
tripartite motif containing 47 [Source:HGNC Symbol;Acc:HGNC:19020]
Coordinates
chr19:56373299-56375620:+
Coord C1 exon
chr19:56373299-56374009
Coord A exon
chr19:56374997-56375092
Coord C2 exon
chr19:56375390-56375620
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCGAGGGTGTCGTCCACAGGCC
3' ss Score
6.73
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
ACAAACAGTCCGAGCTGCTGCAGCTCCGCCAGGGCTCGGGCCCGGGGCCCGGCCCCTGCCCGGCCCCGGCCCCCAGCCCCTGCCCGGCCCCGGCCCCCGGCCCGGCCCCGGCCCCCGAGCCGGCAACACCCAGCGCGCCGCCCAGCGCCCCGGAGCCGTCGGCTCCCTGCGCGCCCGAGTCATGGCCGCCCGGCGAGGAGCCGGTGCGATGCGATGCGTGCCCCGAAGGCGCCGCCCTGCCCGCCGCGCTCTCCTGCCTCTCCTGCCTCGCGTCCTTCTGTCCCGCGCACTTGGGTCCGCACGAGCGCAGCCCCGCGCTGCGCGGACACCGCCTGGTGCCGCCGCTGCGCCGGCTGGAGGAGAGCCTGTGTCCGCGCCACCTGCGGCCGCTCGAGCGCTACTGCCGCGCCGAGCGCGTGTGCCTGTGCGAGGCCTGCGCCGCCCAGGAGCACCGGGGCCACGAGCTCGTGCCACTGGAGCAGGAGCGCGCGCTCCAGGAG
Seq A exon
GCCGAGCAGCCCAAAGTCCTGAGCGCCGTGGAGGACCGCATGGATGAGCTGGGCGCGGGCATTGCTCAGTCCCGGCGCACGGTGGCCCTCATCAAG
Seq C2 exon
AGCGCAGCCGTGGCAGAGCGGGAGAGGGTGAGCCGGCTGTTTGCCGAGGCTGCGGCCGTCCTGCAGGGGTTTCAGACCCAAGTGCTGGGCTTCATCGACGAGGGGGAGGCGACCATGCTGGGCCGCTCCCAGGGCGACCTGCGGCGGCAGGAGGAGCAGCGGAGCCGACTCAGCAGGGCCCGCCACAACCTCAGTCAGGTCCCCGAAGCCGACTCGGTCAGCTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018920_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=0.188 C2=0.299
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=19.8),PF0064319=zf-B_box=WD(100=17.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGCCTGTGTCCGC
R:
CTCACCCTCTCCCGCTCTG
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development