HsaEX0067147 @ hg38
Exon Skipping
Gene
ENSG00000132481 | TRIM47
Description
tripartite motif containing 47 [Source:HGNC Symbol;Acc:HGNC:19020]
Coordinates
chr17:75876262-75878575:-
Coord C1 exon
chr17:75877874-75878575
Coord A exon
chr17:75876718-75876813
Coord C2 exon
chr17:75876262-75876492
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATGGAGGGTGTTGTCCACAGGCT
3' ss Score
5.46
5' ss Seq
AAGGTCAAA
5' ss Score
1.82
Exon sequences
Seq C1 exon
AGCCCTTCCCCGACGGCCTTCAGCTCCGCAAGAACCACACGCTGTCCGAGCTGCTGCAGCTCCGCCAGGGCTCGGGCCCCGGGTCCGGCCCCGGCCCGGCCCCTGCCCTGGCCCCGGAGCCCTCGGCACCCAGCGCGCTGCCCAGTGTCCCGGAGCCGTCGGCCCCCTGCGCTCCCGAGCCGTGGCCCGCGGGCGAAGAGCCAGTGCGCTGCGACGCGTGCCCCGAGGGCGCGGCCCTGCCCGCCGCGCTGTCCTGCCTCTCCTGCCTCGCCTCCTTTTGCCCCGCGCACCTGGGCCCGCACGAGCGCAGCCCCGCCCTCCGCGGACACCGCCTGGTGCCGCCGCTGCGCCGGCTAGAGGAGAGCCTGTGCCCGCGCCACCTACGGCCGCTCGAGCGCTACTGCCGCGCGGAGCGCGTGTGTCTGTGCGAGGCCTGCGCCGCACAGGAGCACCGCGGCCACGAGCTGGTGCCGCTGGAGCAGGAGCGCGCGCTTCAGGAG
Seq A exon
GCTGAGCAGTCCAAAGTCCTGAGCGCCGTGGAGGACCGCATGGACGAGCTGGGTGCTGGCATTGCACAGTCCAGGCGCACAGTGGCCCTCATCAAG
Seq C2 exon
AGTGCAGCCGTAGCAGAGCGGGAGAGGGTGAGCCGGCTGTTTGCAGATGCTGCGGCCGCCCTGCAGGGCTTCCAGACCCAGGTGCTGGGCTTCATCGAGGAGGGGGAAGCTGCCATGCTAGGCCGCTCCCAGGGTGACCTGCGGCGACAGGAGGAACAGCGCAGCCGCCTGAGCCGAGCCCGCCAGAATCTCAGCCAGGTCCCTGAAGCTGACTCAGTCAGCTTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132481-'0-3,'0-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.176 C2=0.276
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=21.8),PF0064319=zf-B_box=WD(100=18.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTCTGTGCGAGGCC
R:
CGATGAAGCCCAGCACCTG
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development