MmuEX6091345 @ mm9
Exon Skipping
Gene
ENSMUSG00000020773 | Trim47
Description
tripartite motif-containing 47 [Source:MGI Symbol;Acc:MGI:1917374]
Coordinates
chr11:115969092-115987954:-
Coord C1 exon
chr11:115987779-115987954
Coord A exon
chr11:115969580-115969675
Coord C2 exon
chr11:115969092-115969322
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCACAAAACCTGGTCCACAGGTG
3' ss Score
6.53
5' ss Seq
AAGGTCCGC
5' ss Score
5.01
Exon sequences
Seq C1 exon
ATTATCGCAATCTGACCTTTGACCCAGAGACCGCCAACCAGTATTTGCACTTGTCTCACAAGGACCAGCGGGTGACACACCATTTCCAGGCCCAGGGCCCAGCCAAGTCGGGCAGCTTCGAGCTGTGGCAGGTGCAGTGTACCCAGAGTTTTCAGACTGGACAACATTACTGGGAG
Seq A exon
GTGGAGCAGTCCAAAGTCCTGAGCGCTGCGGAGGACCGCATGGATGAACTGGGTGCCGGCATCGCACAGTCCCGCCGTACTGTGGCCCTCATCAAG
Seq C2 exon
AGTGCAGCTGTGGCAGAGCGGGAGAGGGTGAGCCAGATGTTTGCCGAGGCCACAGCCACCCTTCAGAGTTTCCAGAACGAGGTGATGGGGTTCATCGAAGAGGGAGAGGCCACAATGTTGGGCCGGTCCCAGGGTGACCTGCGTAGACAAGAGGAACAGCGCAGCCGCCTAAGCAAGGCACGGCACAACCTCGGTCAGGTTCCAGAGGCGGATTCAGTCAGCTTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020773-'1-6,'1-3,3-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.219 C2=0.338
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCAGTGTACCCAGAGTT
R:
CAACATTGTGGCCTCTCCCTC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: