GgaEX1060411 @ galGal4
Exon Skipping
Gene
ENSGALG00000028301 | TRIM47
Description
tripartite motif containing 47 [Source:HGNC Symbol;Acc:HGNC:19020]
Coordinates
chr18:4604516-4606899:+
Coord C1 exon
chr18:4604516-4604953
Coord A exon
chr18:4606459-4606554
Coord C2 exon
chr18:4606669-4606899
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCGTCCTTTGTGCCTGCAGGCC
3' ss Score
10.97
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
TCCGGGCCTGGATCCCCCCCCGGTAGCGCCGGGTTCAGCGGAACGGGACCCAGCGGAGCCGAGTCCTCCCCCTCCGAGATGGCGCCGGGAGCTGAAGAGGAGCCGGGGGGAGAAGCGGAGCTGGAGGAGGGGACTGCGGCGGTGCTGTGCGACGTGTGCCCCGAGGGCGATCGGGCGGCGGCTGCCCGCTCGTGCCTGGTGTGCCTGGCGTCCTTCTGCGGGGCCCACCTGGAGCCCCACCGCCGCTCCCCCGCGTTCCGCTCGCACCGCCTCGTAGCCCCGTTGCGGCGCTTGGAAGAAGGGCTGTGCCCGCGGCACCTGCAGCCCCTCGACGGCTTCTGCCGGGCCGAGCAGACCTGCGTGTGCGTCCGCTGCCGCGCCAACGAGCACCGCGGCCACGACGTGGTGTCCCTCGAGAAGGAGCGCGAGCTGAAGGAG
Seq A exon
GCCCAGCGAGCCAAATTCCTCAGCAGTGTGGACAACGAGCTGGAGGAGCTGGCTGTGACCATCGCACAGACCAGGAAGATGGTGGAGCTCATCAAG
Seq C2 exon
GGTGTTGCCAGCAAGGAGAAGGAGCGGGTGGAGAAGCTCTTTGCAGAAGCTTCTGAGCTGCTGGCCACCTTCCAGAAGGAGGTGGCCGCCTTCATCGAGGACAGCGAGCGCTCCATGCTGGGGGAGACCGAGGCTGACCTCCGCTGGAAGGAGGAGAGGAGAGCCAAGCTGGCCCAGGGCAAGCAGAACCTGGAGAACATCCCCAGCACCGACACCATCTACTTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028301-'2-2,'2-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF0064319=zf-B_box=WD(100=28.1),PF058526=DUF848=PU(7.2=5.5)
A:
PF058526=DUF848=FE(27.9=100)
C2:
PF058526=DUF848=PD(62.2=89.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTGGAAGAAGGGCTGTG
R:
CTCCTTCTCCTTGCTGGCAAC
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]