MmuEX6091345 @ mm10
Exon Skipping
Gene
ENSMUSG00000020773 | Trim47
Description
tripartite motif-containing 47 [Source:MGI Symbol;Acc:MGI:1917374]
Coordinates
chr11:116107778-116110237:-
Coord C1 exon
chr11:116109534-116110237
Coord A exon
chr11:116108266-116108361
Coord C2 exon
chr11:116107778-116108008
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCACAAAACCTGGTCCACAGGTG
3' ss Score
6.53
5' ss Seq
AAGGTCCGC
5' ss Score
5.01
Exon sequences
Seq C1 exon
ACGGCCTGCAGCTCCGCAAGAACCACACGCTGTCCGAGTTGCTGCAGCTCCGCCAGGGCTCGGTCCCGGGACCCATGTCCGCCCCGGCTTCAGGATCGACCCGGGGCGCCACGCCCGAGCCCTCCGCGCCCAGCGCACCACCTCCGGCTCCGGAACCATCGGCTCCCTGCGCGCCGGAGCAGTGGCCCGCGGGTGAGGAGCCGGTGCGCTGCGACGCGTGCCCCGAGGGCGCCGCCCTGCCCGCCGCGCTCTCTTGCCTCTCCTGCCTCGCCTCCTTCTGCTCCGCGCATCTGGCCCCCCACGAACGCAGCCCCGCCCTGCGCGGCCACCGCCTGGTGCCCCCGCTGCGCCGACTTGAGGAGAGCCTGTGTCCGCGCCACCTGCGGCCTCTGGAGCGCTACTGTCGCGTGGAGCGTGTGTGCCTTTGCGAGGCCTGTGCCACTCAGGACCATCGCGGCCACGAGCTCGTGCCGCTGGAGCAGGAGCGCGCGCTTCAGGAG
Seq A exon
GTGGAGCAGTCCAAAGTCCTGAGCGCTGCGGAGGACCGCATGGATGAACTGGGTGCCGGCATCGCACAGTCCCGCCGTACTGTGGCCCTCATCAAG
Seq C2 exon
AGTGCAGCTGTGGCAGAGCGGGAGAGGGTGAGCCAGATGTTTGCCGAGGCCACAGCCACCCTTCAGAGTTTCCAGAACGAGGTGATGGGGTTCATCGAAGAGGGAGAGGCCACAATGTTGGGCCGGTCCCAGGGTGACCTGCGTAGACAAGAGGAACAGCGCAGCCGCCTAAGCAAGGCACGGCACAACCTCGGTCAGGTTCCAGAGGCGGATTCAGTCAGCTTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020773-'7-9,'7-6,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.219 C2=0.338
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=21.8),PF0064319=zf-B_box=WD(100=17.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCACTCAGGACCATC
R:
TCTCCCTCTTCGATGAACCCC
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types