RnoEX0093683 @ rn6
Exon Skipping
Gene
ENSRNOG00000008215 | Trim47
Description
tripartite motif-containing 47 [Source:RGD Symbol;Acc:1597317]
Coordinates
chr10:104656731-104659188:-
Coord C1 exon
chr10:104658484-104659188
Coord A exon
chr10:104657270-104657365
Coord C2 exon
chr10:104656731-104656961
Length
96 bp
Sequences
Splice sites
3' ss Seq
TAATCTCTCGGGGTCCACAGGTT
3' ss Score
6.97
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
ACGGCCTGCAGCTCCGCAAGAACCACACGCTGTCCGAGTTGCTGCAGCTCCGCCAGGGCTCGAGCCCCGGACCCATGTCCGCCCCGGCTCCAGGCTCGGCCCGGGGCGCGACGCCCGAGCCCTCCGCACCCAGCGCACCACCTCCGGCTCCGGAGCCCTCCGCTCCCTGCGCGCCCGAGCCGTGGCCCGCGGGTGAGGAGCCGGTGCGCTGCGACGCGTGCCCCGAGGGCGCCGCCCTGCCCGCCGCGCTCTCCTGCCTCTCCTGCCTCGCCTCCTTCTGCTCCGCGCACCTGGCCCCGCACGAACGCAGCCCCGCCCTGCGCGGCCACCGCCTGGTGCCCCCGCTGCGCCGGCTGGAGGAGAGCCTGTGCCCGCGCCACCTGCGGCCGCTGGAGCGCTACTGCCGCGTGGAGCGTGTGTGCCTTTGCGAGGCCTGCGCCACTCAGGAGCATCGGGGCCACGAGCTCGTGCCGCTGGAGCAGGAGCGCGCGCTTCAGGAG
Seq A exon
GTTGAACAGTCCAAAGTCCTGAGCGCTGTGGAGGACCGCATGGATGAGCTGGGTGCCGGCATTGCACAATCCCGCCGTACTGTGGCCCTCATCAAG
Seq C2 exon
AGTGCAGCTGTGGCAGAGCGGGAGAGGGTGAGCCAGATGTTTGCCGAGGCCACAGCCTCCCTACAGAGTTTCCAGACTGAGGTGCTGGGGTTCATCGAGGAGGGGGAGGCCGCCATGTTGGGCCGCTCTCAAGGTGACCTGCGCAGACAAGAGGAACAGCGCAGCCGCCTAAGCCGGGCTCGCCACAACCTCAGTCAGGTTCCAGAGGCGGATTCAGTCAGCTTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008215-'1-1,'1-0,6-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=21.8),PF0064319=zf-B_box=WD(100=17.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCGTGTGTGCCTTTG
R:
CCAGCACCTCAGTCTGGAAAC
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]