BtaEX0037916 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102980451-102982834:-
Coord C1 exon
chr11:102982723-102982834
Coord A exon
chr11:102982289-102982404
Coord C2 exon
chr11:102980451-102980520
Length
116 bp
Sequences
Splice sites
3' ss Seq
GTTCTGCTCTTGTCTTGGAGCAG
3' ss Score
0.33
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCTACTCTTTGGAGCCCATCTGCAGTTTGTGGGATGACCACTCCTCCAACTTCTCCTGGAAATGTCCCACCTGATCTGTCACATCCTTACAGTAAAGTCTTTGGTACAACTG
Seq A exon
CAGGTGGGAAAGGAACTCCTCTGGGAACCCCTGCAACCTCTCCTCCTCCAGCCCCACCCTGCCATTCGGACGACTGCGTGCACCTTTCACTCCCACAGGCCACGGCCCCCAAGAAG
Seq C2 exon
GAAGAGAGGACAGACTCCGCAAGGCCCTGTCTACACAGACAACCCCATGTTCCGAATGACAGAGGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190-'16-20,'16-18,17-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.2=100)
A:
PF043887=Hamartin=FE(5.3=100)
C2:
PF043887=Hamartin=FE(3.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACTCTTTGGAGCCCATCTG
R:
TCCTCTGTCATTCGGAACATGG
Band lengths:
178-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development