GgaEX1060755 @ galGal4
Exon Skipping
Gene
ENSGALG00000003500 | TSC1
Description
tuberous sclerosis 1 [Source:HGNC Symbol;Acc:HGNC:12362]
Coordinates
chr17:6733287-6734310:-
Coord C1 exon
chr17:6734187-6734310
Coord A exon
chr17:6733690-6733802
Coord C2 exon
chr17:6733287-6733359
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTTTTGCTCCCACTTTTCAGCAG
3' ss Score
7.08
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTTACCATCTGGAGTCCTTCTGCAGTTTGTGGTATGACCACTCCACCAACCTCCCCTGGAATTGTCCCATCAGAGTCATCCCAGTCAACATCACAACCTTACAGCAAAGCTTTTGGCACATCTG
Seq A exon
CAGTGGGGAAGGGAACACCTTTGGGGACACCAGCCACATCTCCTCCACCCTGCACTTCAGATGACTTTGTGCATGTCTCACTTCCTTCAGCTGCTGCCACACCTCCTAAAAAG
Seq C2 exon
GAGGACAAACCAGATTCTGGGAGGCCTTCACTGTACCGACAGCAAAATGTCATAAGCAGCGATAAATCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003500_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.845 A=1.000 C2=0.840
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.7=100)
A:
PF043887=Hamartin=FE(5.1=100)
C2:
PF043887=Hamartin=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTGGAGTCCTTCTGCA
R:
CCAATGATTTATCGCTGCTTATGACA
Band lengths:
194-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]