RnoEX6016171 @ rn6
Exon Skipping
Gene
ENSRNOG00000011470 | Tsc1
Description
TSC complex subunit 1 [Source:RGD Symbol;Acc:620124]
Coordinates
chr3:7251195-7254188:+
Coord C1 exon
chr3:7251195-7251309
Coord A exon
chr3:7251556-7251674
Coord C2 exon
chr3:7254119-7254188
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTTGTGTCTGAGCAGGTG
3' ss Score
8.39
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTAGTCTTTGGAGCCCATCTGCAGTCTGTGGTATGACCACTCCTCCTACGTCTCCTGGAAATGTCCCGGCTGATTTGTCACATCCATACAGTAAAGCCTTTGGTACTACCACTG
Seq A exon
GTGGAAAAGGAACTCCTTCAGGAACCCCAGCGACCTCTCCTCCCCCAGCCCCGCCTTGTCCCCAAGACGACTGTGCGCACGGTCCAGCCTCCCAGGCCTCAGCCACACCCCCCAGGAAG
Seq C2 exon
GAAGAAAGAGCAGATTCTTCAAGGCCTTACCTACCCAGACAGCAGGATGTTCCGAGTGACCGCGGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011470-'15-19,'15-16,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(5.3=100)
A:
PF043887=Hamartin=FE(5.4=100)
C2:
PF043887=Hamartin=FE(3.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGAGCCCATCTGCAGTC
R:
CTAATCCGCGGTCACTCGGAA
Band lengths:
179-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]