BtaEX0038235 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012827 | TTLL11
Description
TTLL11 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A7E2Z5]
Coordinates
chr11:92737269-92852246:-
Coord C1 exon
chr11:92852151-92852246
Coord A exon
chr11:92851289-92851404
Coord C2 exon
chr11:92737269-92741514
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGGAATCCTTACCCTTCAAGCTC
3' ss Score
4.78
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATTTTAGGCTTTGACATTCTTCTCATGAAAAATCTGAAGCCTATACTACTTGAAGTAAATGCAAATCCCAGCATGAGAATCGAACACGAGCAAGAA
Seq A exon
CTCTCTCCAGGGGTATTTGAGAATGTCCCCAGTCTTGTCGATGAAGAAGTGAAAGTGGCCGTGATCAGAGACACACTGCGTCTCATGGACCCACTTAAAAAGAAAAGAGAGAGCCA
Seq C2 exon
GTCTCAGCTGCTGGGGAAGTCGTTAGCCTCAAAAGAAAATCCTCCTCACAGCGATCTGGCCAGCGCCTCACAGGGCAACGCCAACCCCGACGCCCACCTGCCCTCCATCTGCCTCAAGCAGGTGTTCCCCAAGTATGCAAAGCAGTTCAACTACCTGCGCCTGGTGGACAGGATGGCAAACCTGTTTATCCGCTTCCTGGGAATCAAGGGGACGATGAAGTTGGGACCAACAGGCTTCCGTACCTTCATCAGGTCAGTGAGACCAGCCCCCTCTGGCTGGGGTTCAGGCAGCCTGGAGACCAGCCTGACATCTGGCTGGCCCCTTCTCCCAGACTGCCCCTGGGAGAATCTGTGATGCCAGATTGGGCCCCACTGGGTTGGGATTGGCCCAGCAGCTGGCACTGGGCCTGGCATATAGTACACTCTTGTTCGTTGAACGAATTAATGAATGCTACAGATGTGAGAGCATTCACAACCTTGTGCTTGTGGTTAAAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012827-'3-9,'3-6,4-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(12.4=100)
A:
PF0313310=TTL=PD(10.4=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAGAATCGAACACGAGC
R:
CCCAACTTCATCGTCCCCTTG
Band lengths:
251-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development