GgaEX0001590 @ galGal3
Exon Skipping
Gene
ENSGALG00000001389 | TTLL11
Description
NA
Coordinates
chr17:9338888-9360956:-
Coord C1 exon
chr17:9360860-9360956
Coord A exon
chr17:9352546-9352664
Coord C2 exon
chr17:9338888-9339145
Length
119 bp
Sequences
Splice sites
3' ss Seq
CATCCCTTTCTGAATTAAAGCTC
3' ss Score
5.78
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
TTTCCTTTTGGCAGACGCTTGCCGTGTGATATCTATTGGCACGGAGTATCGTTTCATGATAGCTACATATTCTCAGGTCAAGTCAACAAGTTTCCAG
Seq A exon
CTCTCTCCTGGGGTGTTTGAAAATGTCCCAAGTCCTGTTGATGAAGAAGTGAAAGTAGCTGTTATCAGAGATACTCTTCGTCTAGTGGACCCTCAGAAAAAGAAGAGAAAAGATATCCA
Seq C2 exon
ATCTCAGACTTCAGAGCATGTGTCAGAAACAAAAGAGGATCTGCTGGATGCAGGGCCAGCGGGTGGACTGGAATATGATACCAGCAAGACCCCAGAGGCTGGCCTACCCTCCCTTTGTCTCAAGCAAGTGTTTCCAAAGTATGCTAAGCAGTTTAATTATCTGCGACTTGTGGACAGAGTGGCTGCATTGTTCATCCGATTTCTTGGTGTCAAAGGGACAACAAAATTGGGGCCGACGGGTTTCCGGACGTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.225 C2=0.230
Domain overlap (PFAM):
C1:
NA
A:
PF0313310=TTL=PD(23.5=90.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCACGGAGTATCGTTTCA
R:
CAGCCACTCTGTCCACAAGTC
Band lengths:
247-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]