MmuEX6100873 @ mm10
Exon Skipping
Gene
ENSMUSG00000026885 | Ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:MGI Symbol;Acc:MGI:1921660]
Coordinates
chr2:35795357-35890367:-
Coord C1 exon
chr2:35890272-35890367
Coord A exon
chr2:35889265-35889380
Coord C2 exon
chr2:35795357-35795602
Length
116 bp
Sequences
Splice sites
3' ss Seq
CGGCATCCTTACCTTCCAAGCTC
3' ss Score
4.12
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATTCTAGGCTTTGACATTCTTCTGATGAAAAACTTGAAGCCTATGCTACTTGAAGTGAATGCAAACCCCAGCATGCGAATTGAGCATGAATACGAA
Seq A exon
CTCTCTCCAGGAGTGTTTGAAAATATCCCCAGCCTGGTGGATGAAGAGGTAAAGGTGGCTGTGATCAGAGACACGCTGCGCCTCATGGACCCGCTGAAGAAGAAAAAGGAGATCCA
Seq C2 exon
GTCTCAGCAGATGGAAAAGTCTTTCACTTCAAAGGAAGATCTGAACTGTGACCCGACTGGTGGTGACTCCGAGCCCAACCCTGAAGCCCATCTGCCCTCCATTTGCCTCAAGCAGGTGTTCCCCAAGTATGCCAAGCAGTTCAACTACTTGCGCCTCGTGGACAGGATGGCCAATTTGTTCATCCGATTTCTGGGAATCAAGGGGACGATGAAGTTGGGACCAACTGGCTTTCGGACCTTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026885-'14-18,'14-11,16-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.262
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(10.1=100)
A:
PF0313310=TTL=PD(7.5=59.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCCCAGCATGCGAATTG
R:
CCCAACTTCATCGTCCCCTTG
Band lengths:
254-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types