HsaEX0068065 @ hg19
Exon Skipping
Gene
ENSG00000175764 | TTLL11
Description
tubulin tyrosine ligase-like family, member 11 [Source:HGNC Symbol;Acc:18113]
Coordinates
chr9:124632776-124737258:-
Coord C1 exon
chr9:124737163-124737258
Coord A exon
chr9:124736288-124736403
Coord C2 exon
chr9:124632776-124633027
Length
116 bp
Sequences
Splice sites
3' ss Seq
AGAATCCTTACCCGTTCAAGCTT
3' ss Score
0.82
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATTTTAGGCTTTGACATTCTTCTAATGAAAAATCTGAAGCCTATACTACTTGAAGTAAATGCAAATCCCAGTATGAGAATCGAACATGAGCACGAA
Seq A exon
CTTTCTCCAGGGGTGTTTGAAAATGTCCCCAGCCTCGTTGATGAAGAAGTGAAAGTGGCTGTGATCAGAGACACTCTGCGCCTCATGGACCCACTTAAGAAGAAAAGAGAGAATCA
Seq C2 exon
GTCTCAGCAGCTTGAAAAACCATTCGCTGGAAAGGAAGATGCTTTGGACGGCGAGCTGACCAGTGCTCCAGACTGCAACGCCAACCCCGAAGCCCACCTGCCTTCCATTTGCCTCAAGCAGGTGTTCCCCAAGTACGCAAAACAGTTCAACTACCTGCGCCTGGTGGACAGGATGGCAAATTTGTTTATCCGGTTCCTGGGCATCAAGGGGACAATGAAGTTGGGGCCAACAGGCTTTCGTACCTTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175764_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.128 C2=0.153
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(10.1=100)
A:
PF0313310=TTL=PD(7.5=59.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAATCGAACATGAGCACGA
R:
TTGGCCCCAACTTCATTGTCC
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)