RnoEX6016610 @ rn6
Exon Skipping
Gene
ENSRNOG00000019339 | AABR07051518.1
Description
tubulin tyrosine ligase like11 [Source:NCBI gene;Acc:689746]
Coordinates
chr3:15131232-15226781:-
Coord C1 exon
chr3:15226686-15226781
Coord A exon
chr3:15225636-15225751
Coord C2 exon
chr3:15131232-15131474
Length
116 bp
Sequences
Splice sites
3' ss Seq
CAGAGTTCTTACCTTCCAAGCTT
3' ss Score
2.18
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATTCTAGGCTTTGACATTCTTCTGATGAAAAACCTGAAGCCCATGCTACTTGAAGTGAATGCAAACCCCAGCATGAGGATTGAGCATGAGTACGAA
Seq A exon
CTTTCTCCAGGAGTGTTTGAAAATATCCCCAGCCTGGTGGACGAAGAAGTGAAGGTGGCCGTGATCAGAGACACGCTGCGCCTCATGGACCCGATGAAGAAGAAAAGGGAGATCCA
Seq C2 exon
GTCTCAGCAGATGGATAAGCCTTTCGCTGCAAAGGAAGATCTGAACTGTGACCTGGCCGGAGACTTCGAGCCCAACCCTGAAGCCCATTTGCCCTCCATTTGCCTCAAGCAGGTGTTCCCCAAGTATGCCAAGCAGTTCAATTACCTGCGCCTGGTAGACAGGATGGCCAATTTGTTCATCCGATTCCTGGGAATCAAGGGGACAATGAAGTTGGGACCAACTGGCTTTCGGACCTTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019339-'12-17,'12-8,13-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.018
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(10.5=100)
A:
PF0313310=TTL=PD(10.0=76.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGAATGCAAACCCCAGCA
R:
TGTCCCCTTGATTCCCAGGAA
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]