DreEX6011878 @ danRer10
Exon Skipping
Gene
ENSDARG00000060374 | ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:ZFIN;Acc:ZDB-GENE-061013-747]
Coordinates
chr5:33038504-33057631:+
Coord C1 exon
chr5:33038504-33038599
Coord A exon
chr5:33040343-33040455
Coord C2 exon
chr5:33057551-33057631
Length
113 bp
Sequences
Splice sites
3' ss Seq
ATTGACTTCACATGTTTCAGGTC
3' ss Score
7.16
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATCCTGGGCTTTGATATCCTGCTGATGAAGAACTTGAAGCCTGTTTTATTAGAAGTCAATGCCAATCCCAGCATGAGGATTGAACACGAGCAGGAG
Seq A exon
GTCTCACCTGGTGTGTATGAATACATCCCCAGTCCAGTAGATGAGGAGGTGAAAGTAGGAGTGATCAGAGACACACTGCGCCTCATGGATCCTGCTCAGAGGAAACACATCAC
Seq C2 exon
GCCCGCCGGGCAGTTGGAGATAGATCTTGATAGCCAGACTAAAAAAAAGCAAAGCCCCAGGACGTCGGGCTACTGGAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060374-'4-7,'4-6,6-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.429
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(10.0=100)
A:
PF0313310=TTL=PD(8.4=68.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCTTTGATATCCTGCTG
R:
AAATTCCAGTAGCCCGACGTC
Band lengths:
175-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]