GgaEX0001590 @ galGal4
Exon Skipping
Gene
ENSGALG00000001389 | TTLL11
Description
tubulin tyrosine ligase-like family member 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr17:8632423-8654491:-
Coord C1 exon
chr17:8654395-8654491
Coord A exon
chr17:8646081-8646199
Coord C2 exon
chr17:8632423-8632680
Length
119 bp
Sequences
Splice sites
3' ss Seq
CATCCCTTTCTGAATTAAAGCTC
3' ss Score
5.78
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
TTTCCTTTTGGCAGACGCTTGCCGTGTGATATCTATTGGCACGGAGTATCGTTTCATGATAGCTACATATTCTCAGGTCAAGTCAACAAGTTTCCAG
Seq A exon
CTCTCTCCTGGGGTGTTTGAAAATGTCCCAAGTCCTGTTGATGAAGAAGTGAAAGTAGCTGTTATCAGAGATACTCTTCGTCTAGTGGACCCTCAGAAAAAGAAGAGAAAAGATATCCA
Seq C2 exon
ATCTCAGACTTCAGAGCATGTGTCAGAAACAAAAGAGGATCTGCTGGATGCAGGGCCAGCGGGTGGACTGGAATATGATACCAGCAAGACCCCAGAGGCTGGCCTACCCTCCCTTTGTCTCAAGCAAGTGTTTCCAAAGTATGCTAAGCAGTTTAATTATCTGCGACTTGTGGACAGAGTGGCTGCATTGTTCATCCGATTTCTTGGTGTCAAAGGGACAACAAAATTGGGGCCGACGGGTTTCCGGACGTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389_MULTIEX1-4/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.084
Domain overlap (PFAM):
C1:
PF0313310=TTL=PU(4.7=45.5)
A:
PF0313310=TTL=PD(10.9=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCACGGAGTATCGTTTCA
R:
CAGCCACTCTGTCCACAAGTC
Band lengths:
247-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]