BtaEX0039363 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020761 | USP33
Description
Bos taurus ubiquitin specific peptidase 33 (USP33), mRNA. [Source:RefSeq mRNA;Acc:NM_001101139]
Coordinates
chr3:67198183-67199237:+
Coord C1 exon
chr3:67198183-67198355
Coord A exon
chr3:67198457-67198551
Coord C2 exon
chr3:67199204-67199237
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCAATGATGTTTCAGGTT
3' ss Score
8.75
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGTCTGTAACCCTCGAGACCTTTCAAGATCTGTCCTTGCCAATTCCTGGCAAGGAAGACCTTGCTAAACTGCATTCGTCAAGTCATCCAACATCTATAGTCAAAGCAGGATCATGTGGCGAAGCATATGCTCCACAAGGGTGGATAGCTTTTTTCATGGAGTATGTGAAGAG
Seq A exon
GTTTGTTGTCTCATGTGTCCCTAGCTGGTTTTGGGGTCCAGTAGTAACCTTGCAAGATTGTCTTGCTGCCTTCTTTGCCAGAGATGAACTAAAAG
Seq C2 exon
GTGACAATATGTACAGTTGTGAAAAATGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020761_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.8=100)
A:
PF0044324=UCH=FE(6.0=100)
C2:
PF0044324=UCH=FE(2.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTGTCCTTGCCAATTCCTG
R:
TTTTTGCATTTTTCACAACTGTACA
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development