MmuEX0050951 @ mm10
Exon Skipping
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152374620-152376275:+
Coord C1 exon
chr3:152374620-152374789
Coord A exon
chr3:152374915-152374985
Coord C2 exon
chr3:152376242-152376275
Length
71 bp
Sequences
Splice sites
3' ss Seq
GTTGTCTCATGTGTCCCTAGCTG
3' ss Score
8.82
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGTCTATAACCCTCGAGACCTTTCAGGATCTGTCCTTGCCGATTCCTGGCAAGGAGGACCTGGCTAAGCTGCACTCCTCCAGTCACCCAACTATAGTCAAAGCAGGGTCATGTGGTGAAGCGTACGCCCCGCAGGGGTGGATAGCTTTCTTCATGGAGTATGTGAAGAG
Seq A exon
CTGGTTTTGGGGTCCAGTAGTTACCTTGCAAGATTGTCTTGCTGCCTTCTTCGCCAGAGATGAACTTAAAG
Seq C2 exon
GTGACAACATGTACAGTTGTGAAAAATGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437-'31-41,'31-38,32-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.8=100)
A:
PF0044324=UCH=FE(4.6=100)
C2:
PF0044324=UCH=FE(2.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGTCCTTGCCGATTCC
R:
TTCACAACTGTACATGTTGTCAC
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types