GgaEX0013156 @ galGal4
Exon Skipping
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17901353-17902328:+
Coord C1 exon
chr8:17901353-17901525
Coord A exon
chr8:17901661-17901731
Coord C2 exon
chr8:17902295-17902328
Length
71 bp
Sequences
Splice sites
3' ss Seq
GTTGTCTCATGTGTTCCTAGCTG
3' ss Score
7.25
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CTGTCTGTAACCTTGGAGACTTTTCAGGATCTGTCCTTGCCAATTCCAGGTAAGGAAGATCTTGCTAAACTCCATTCTGCAAGTCATCAGACATCTCTAGTCAAAACAGGGTCGTGTGGAGAAGCATATGCCCCCCAGGGCTGGATAGCATTTTTTATGGAATATTTCAAAAG
Seq A exon
CTGGTTTTGGGGTCCAGTTGTAACCTTACAAGATTGTCTTGCTGCCTTTTTCGCCAGAGATGAGCTGAAGG
Seq C2 exon
GTGATAACATGTACAGCTGTGGAAGGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.9=100)
A:
PF0044324=UCH=FE(4.6=100)
C2:
PF0044324=UCH=FE(2.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTTGCCAATTCCAGGT
R:
CACCTTCCACAGCTGTACATGT
Band lengths:
171-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]