MmuEX0050951 @ mm9
Exon Skipping
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152037584-152039239:+
Coord C1 exon
chr3:152037584-152037753
Coord A exon
chr3:152037855-152037949
Coord C2 exon
chr3:152039206-152039239
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCAATGATGTTTCAGGTT
3' ss Score
8.75
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGTCTATAACCCTCGAGACCTTTCAGGATCTGTCCTTGCCGATTCCTGGCAAGGAGGACCTGGCTAAGCTGCACTCCTCCAGTCACCCAACTATAGTCAAAGCAGGGTCATGTGGTGAAGCGTACGCCCCGCAGGGGTGGATAGCTTTCTTCATGGAGTATGTGAAGAG
Seq A exon
GTTTGTTGTCTCATGTGTCCCTAGCTGGTTTTGGGGTCCAGTAGTTACCTTGCAAGATTGTCTTGCTGCCTTCTTCGCCAGAGATGAACTTAAAG
Seq C2 exon
GTGACAACATGTACAGTTGTGAAAAATGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437-'23-21,'23-19,24-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.8=100)
A:
PF0044324=UCH=FE(6.1=100)
C2:
PF0044324=UCH=FE(2.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGTCCTTGCCGATTCC
R:
TTCACAACTGTACATGTTGTCAC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: