HsaEX6031714 @ hg19
Exon Skipping
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:20059]
Coordinates
chr1:78186857-78187881:-
Coord C1 exon
chr1:78187709-78187881
Coord A exon
chr1:78187516-78187610
Coord C2 exon
chr1:78186857-78186890
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCTATCAATGATGTTTCAGGTT
3' ss Score
8.31
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGTCTGTAACCCTCGAGACCTTTCAAGATCTGTCCTTGCCAATTCCTGGCAAGGAAGACCTTGCTAAGCTGCATTCATCAAGTCATCCAACTTCTATAGTCAAAGCAGGATCATGTGGCGAAGCATATGCTCCACAAGGGTGGATAGCTTTTTTCATGGAATATGTGAAGAG
Seq A exon
GTTTGTTGTCTCATGTGTCCCTAGCTGGTTTTGGGGTCCAGTAGTAACCTTGCAAGATTGTCTTGCTGCCTTCTTTGCCAGAGATGAACTAAAAG
Seq C2 exon
GTGACAATATGTACAGTTGTGAAAAATGCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254-'19-25,'19-22,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.8=100)
A:
PF0044324=UCH=FE(11.1=100)
C2:
PF0044324=UCH=PU(7.8=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTGTCCTTGCCAATTCCTG
R:
TTTTTGCATTTTTCACAACTGTACA
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)