DreEX0083812 @ danRer10
Exon Skipping
Gene
ENSDARG00000016163 | usp33
Description
ubiquitin specific peptidase 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2323]
Coordinates
chr2:8947995-8950125:+
Coord C1 exon
chr2:8947995-8948167
Coord A exon
chr2:8949893-8949963
Coord C2 exon
chr2:8950092-8950125
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCATTGATTTTTAGCTG
3' ss Score
7.37
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTTTCGGTGACTTTGGAGAACTTCCAGGACATCTCTCTGCCCATCCCAGGGAAAGAGGACCTTGCCAAGCTGCACTCGTCCTCCCACCAGACGGCTCTGGTCAAGGCTGGCTCTTGTGGTGAAGCATACGCCCCTCAAGGCTGGATTGCTTTTGTCATGGAATATATCAAGAG
Seq A exon
CTGGTTCTGGGGCCCTGTGGTGACACTGCAGGATTGTCTGGCAGCCTTTTTTGCCAGGGATGAACTAAAAG
Seq C2 exon
GAGACAACATGTACAGCTGTGAAAAATGCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016163-'17-17,'17-16,18-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.1=100)
A:
PF0044324=UCH=FE(4.7=100)
C2:
PF0044324=UCH=FE(2.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACATCTCTCTGCCCATCC
R:
TCACAGCTGTACATGTTGTCTC
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]