GgaEX0013156 @ galGal3
Exon Skipping
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19702733-19703708:+
Coord C1 exon
chr8:19702733-19702905
Coord A exon
chr8:19703017-19703111
Coord C2 exon
chr8:19703675-19703708
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCAATGATGTTTCAGGTT
3' ss Score
8.75
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CTGTCTGTAACCTTGGAGACTTTTCAGGATCTGTCCTTGCCAATTCCAGGTAAGGAAGATCTTGCTAAACTCCATTCTGCAAGTCATCAGACATCTCTAGTCAAAACAGGGTCGTGTGGAGAAGCATATGCCCCCCAGGGCTGGATAGCATTTTTTATGGAATATTTCAAAAG
Seq A exon
GTTTGTTGTCTCATGTGTTCCTAGCTGGTTTTGGGGTCCAGTTGTAACCTTACAAGATTGTCTTGCTGCCTTTTTCGCCAGAGATGAGCTGAAGG
Seq C2 exon
GTGATAACATGTACAGCTGTGGAAGGTGTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974-'20-20,'20-18,21-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.8=100)
A:
PF0044324=UCH=FE(6.0=100)
C2:
PF0044324=UCH=FE(2.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTTGCCAATTCCAGGT
R:
CACCTTCCACAGCTGTACATGT
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]