BtaEX0039611 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11488318-11489434:+
Coord C1 exon
chr22:11488318-11488455
Coord A exon
chr22:11488560-11488718
Coord C2 exon
chr22:11489255-11489434
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTCACCGCTCCCGCCCACAGGGC
3' ss Score
11.61
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATATGGTGTATCCAGGATTCACACAGGCAGCCTGTGGACCCCAAGCGCCACGGACAGTTGTGCGCTGACAGCTGCTACCTTGTCCTGTACACCTACCGGAGGATGGGCTTCGTCCAGCACGTCCTGTACCTGTGGCAG
Seq A exon
GGCCTCCAGGCCACGGCACATGAGATCAGCGCCCTGAGGGGCAATGCCGAGGAGCTGGACCTGTGGTACCGTGGAGCCCTGGTGCAGGAGCACGTGACCATGGGCAGCGAGCCCCCCCACTTCCTCGCCATCTTCCAGGGCCAGCTCGTGATCTTCCAG
Seq C2 exon
GGGCACCCCAGGCACAGCAGGAAGGGGCAGCCAGCACCCGCCGTGAGCCTCTTCCACATCCAAGGCACCGACAGCTACAACACCCGGACCATGGAGGTGCCAGCCCGCGCCTCAGCCCTCAACTCCAGCGACGTCTTCCTGCTGGTGACAGCCAACCTCTGCTACCTCTGGTTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963-'19-17,'19-15,20-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(47.8=55.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGCTGCTACCTTGTCCT
R:
ACCAGAGGTAGCAGAGGTTGG
Band lengths:
245-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development