HsaEX6055047 @ hg19
Exon Skipping
Gene
ENSG00000136059 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:30906]
Coordinates
chr3:38042947-38044066:+
Coord C1 exon
chr3:38042947-38043084
Coord A exon
chr3:38043193-38043351
Coord C2 exon
chr3:38043887-38044066
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTCACTGCCCCCACCTGCAGGGC
3' ss Score
10.92
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGTGGTGCATCCAGGACTTACACAGGCAGCCCGTGGACCCCAAGCGTCATGGACAGCTGTGTGCAGGCAACTGCTACCTTGTGCTCTACACATACCAGAGGCTGGGCCGTGTCCAGTACATCCTGTACCTATGGCAG
Seq A exon
GGCCACCAGGCCACTGCGGATGAGATTGAGGCCCTGAACAGCAACGCTGAGGAACTAGATGTCATGTATGGTGGCGTCCTAGTACAGGAGCATGTGACCATGGGCAGCGAGCCCCCCCACTTCCTCGCCATCTTCCAGGGCCAGCTGGTGATCTTCCAG
Seq C2 exon
GAGAGAGCTGGGCACCATGGAAAGGGGCAGTCAGCATCCACCACAAGGCTTTTCCAAGTGCAAGGCACTGACAGCCACAACACCAGGACCATGGAGGTGCCAGCCCGTGCCTCATCCCTCAACTCCAGTGACATCTTCTTGCTGGTCACAGCCAGCGTCTGCTACCTCTGGTTTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.367
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGCTACCTTGTGCTCT
R:
CAAACCAGAGGTAGCAGACGC
Band lengths:
246-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)