MmuEX6069667 @ mm9
Exon Skipping
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118974577-118975998:+
Coord C1 exon
chr9:118974577-118974714
Coord A exon
chr9:118974978-118975136
Coord C2 exon
chr9:118975819-118975998
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCTTCCCTGTTGCAGGGC
3' ss Score
11.89
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GTGTGGTACATCCAGGACTTACAAAGACAGCCTGTACATCCCAAGTACTATGGCCAGTTGTGCTCAGGAAACTGCTACCTTGTCCTCTACACATACCAGAAACTGGGCTGTGTCCAGTACCTCCTGTACCTATGGCAG
Seq A exon
GGCCACCAAAGCACTGTAGAAGACACCAAGGCCCTGAACTGCAGTGCTGAAGAGTTGGACCTCATGCACCAGGGTGCACTGGCGCAGGGGCATGTGACCATGGGCAGTGAGCCTCCCCACTTCCTAGCCATCTTCCAGGGGCGGCTGGTGGTCTTCCAG
Seq C2 exon
GGGAATGCAGGCAACAAAGGGGAAAGACCACCAGTATCCGACACCAGGCTTTTCCACGTGCAAGGGACCGAGAGCCACAACACCAGAACTATGGAGGTGCCGGCCCGTGCCTCCTCCCTCACTTCTGGTGACGTCTTCTTTCTGATCACAAGTCATGTTTGCTATCTCTGGTTTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.328
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PD(22.2=20.0),PF0062617=Gelsolin=PU(48.6=56.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGCCTGTACATCCCAAGT
R:
CCAGAAGTGAGGGAGGAGGC
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: