RnoEX6038128 @ rn6
Exon Skipping
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127747347-127748670:+
Coord C1 exon
chr8:127747347-127747484
Coord A exon
chr8:127747598-127747756
Coord C2 exon
chr8:127748491-127748670
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCTCCCTGTTGCAGGGC
3' ss Score
12.17
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGTGGTACATCCAGGGCTCACAAAGGCAGCCTGTAGATCCCAAGCACCATGGCCAGCTGTGCTCAGGAAACTGCTACCTTGTCCTCTACAAGTACCAGAAACTGGGGCGTGTCCAGTACATCCTGTACCTGTGGCAG
Seq A exon
GGCCACCAAAGCACTGTAGAAGACGTCAAGGCCCTGAACTGCAACGCTGAGGAGTTGGACCTCTTACACCAGGGTGCTCTGGTGCAGGGGCATGTGACCATGGGCAGAGAGCCTCCCCACTTCCTTGCCATCTTCCAGGGGCAGCTGGTGGTCCTTCAG
Seq C2 exon
GGGAATGCAGGCAACAAAGGGGGGAGGCTGCCAATATCCGACACCAGGCTTTTCCACGTGCAAGGGACCGAGAGCCACAACACCAGGACTATGGAGGTGCCAGCCCGAGCCTCCTCCCTCACTTCCAGCGACGTCTTCTTTCTGATCACAAGTCACGTCTGTTACCTCTGGTTCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.2=87.0)
A:
PF0062617=Gelsolin=PD(49.4=77.4)
C2:
PF0062617=Gelsolin=PU(48.6=56.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGATCCCAAGCACCATGGC
R:
GAAGACGTCGCTGGAAGTGAG
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]